Detailed information of OS493_030958-T1 in Lophelia pertusa

Genomic Location: scaffold_206:287260...297830
NR annotation: KAJ7383071.1, hypothetical protein OS493_030958 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P06766DNA polymerase beta OS=Rattus norvegicus OX=10116 GN=Polb PE=1 SV=4
P06746DNA polymerase beta OS=Homo sapiens OX=9606 GN=POLB PE=1 SV=3
Q27958DNA polymerase beta OS=Bos taurus OX=9913 GN=POLB PE=2 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001983 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14791
all species →		DNA_pol_B_thumbDNA polymerase beta thumb FamilyInterproscan
PF14792
all species →		DNA_pol_B_palmDNA polymerase beta palm DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043519
all species →		Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR002054
all species →		DomainDNA-directed DNA polymerase XInterproscan
IPR029398
all species →		DomainDNA polymerase beta, thumb domainInterproscan
IPR002008
all species →		FamilyDNA polymerase family X, beta-likeInterproscan
IPR022312
all species →		FamilyDNA polymerase family XInterproscan
IPR028207
all species →		DomainDNA polymerase beta, palm domainInterproscan
IPR037160
all species →		Homologous_superfamilyDNA polymerase, thumb domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11276
all species →		DNA POLYMERASE TYPE-X FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003887
all species →		Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0006284
all species →		Biological Processbase-excision repairInterproscan
GO:0006303
all species →		Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_030958-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_030958-T1 global co-expression network
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