Gene detail

Detailed information of OS493_030970-T1 in Lophelia pertusa

Genomic Location: scaffold_206:459721...461175
NR annotation: KAJ7383083.1, hypothetical protein OS493_030970 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000877 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01823 all species →	MACPF	MAC/Perforin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020864 all species →	Domain	Membrane attack complex component/perforin (MACPF) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45742 all species →	COMPLEMENT COMPONENT C6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07818	PRF1; perforin 1	-	Type I diabetes mellitus	ko04940	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030970-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

782.9Max TPM

44.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	49.58	152.81
polyp at pH7 6	18	18	145.87	782.86
coral polyp · control treatment	16	15	15.19	77.05
coral polyp · oil and dispersant treatment	16	16	18.34	98.17
coral polyp · oil treatment	16	15	37.57	193.60
coral polyp · dispersant treatment	16	15	11.57	75.02
Polyp	10	9	2.56	6.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	152.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	143.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.35
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.95
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.07
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.21
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.25
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.99
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	782.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	768.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	382.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	357.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.34
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.30
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.97
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.99
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.35
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.17
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.40
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	193.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	158.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	104.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.26
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.10
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.26
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.