Gene detail

Detailed information of OS493_031008-T1 in Lophelia pertusa

Genomic Location: scaffold_207:418135...419501
NR annotation: KAJ7377050.1, Retinoid-inducible serine carboxypeptidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54DY7	Serine carboxypeptidase S10 family member 1 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0291912 PE=3 SV=1
Q9HB40	Retinoid-inducible serine carboxypeptidase OS=Homo sapiens OX=9606 GN=SCPEP1 PE=1 SV=1
Q920A5	Retinoid-inducible serine carboxypeptidase OS=Mus musculus OX=10090 GN=Scpep1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002292 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00450 all species →	Peptidase_S10	Serine carboxypeptidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001563 all species →	Family	Peptidase S10, serine carboxypeptidase	Interproscan
IPR018202 all species →	Active_site	Serine carboxypeptidase, serine active site	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11802 all species →	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004185 all species →	Molecular Function	serine-type carboxypeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031008-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031008-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

13.5Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.33	9.00
polyp at pH7 6	18	13	3.65	7.91
coral polyp · control treatment	16	15	7.51	13.51
coral polyp · oil and dispersant treatment	16	14	5.81	11.93
coral polyp · oil treatment	16	16	6.18	11.80
coral polyp · dispersant treatment	16	15	3.95	8.96
Polyp	10	9	2.62	3.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.78
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.46
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.78
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.47
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.09
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.73
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.84
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.53
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.48
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.53
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.