Gene detail

Detailed information of OS493_031036-T1 in Lophelia pertusa

Genomic Location: scaffold_208:23216...33900
NR annotation: KAJ7370621.1, tRNA methyltransferase 11 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NS23	tRNA (guanine(10)-N(2))-methyltransferase TRMT11 OS=Xenopus laevis OX=8355 GN=trmt11.L PE=2 SV=1
Q05B63	tRNA (guanine(10)-N(2))-methyltransferase TRMT11 OS=Bos taurus OX=9913 GN=TRMT11 PE=2 SV=1
Q7Z4G4	tRNA (guanine(10)-N(2))-methyltransferase TRMT11 OS=Homo sapiens OX=9606 GN=TRMT11 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003571 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01170 all species →	UPF0020	Putative RNA methylase family UPF0020	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016691 all species →	Family	tRNA guanosine-2'-O-methyltransferase, TRM11	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000241 all species →	Domain	Ribosomal RNA large subunit methyltransferase K/L-like, methyltransferase domain	Interproscan
IPR002052 all species →	Conserved_site	DNA methylase, N-6 adenine-specific, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13370 all species →	RNA METHYLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0160102 all species →	Molecular Function	tRNA (guanine(10)-N2)-methyltransferase activity	Interproscan
GO:0004809 all species →	Molecular Function	obsolete tRNA (guanine-N2-)-methyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0032259 all species →	Biological Process	methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15430	TRM11, TRMT11; tRNA (guanine10-N2)-methyltransferase	EC:2.1.1.214	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031036-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

25.4Max TPM

3.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	2.73	5.47
polyp at pH7 6	18	14	2.62	6.51
coral polyp · control treatment	16	16	4.27	12.21
coral polyp · oil and dispersant treatment	16	16	3.92	25.39
coral polyp · oil treatment	16	16	3.76	6.73
coral polyp · dispersant treatment	16	16	2.38	5.94
Polyp	10	9	2.87	5.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.18
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.14
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.49
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.46
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.04
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.69
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.63
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.94
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.98
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.68
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.