Gene detail

Detailed information of OS493_031039-T1 in Lophelia pertusa

Genomic Location: scaffold_208:95255...103836
NR annotation: KAJ7370624.1, Glutamate--cysteine ligase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97494	Glutamate--cysteine ligase catalytic subunit OS=Mus musculus OX=10090 GN=Gclc PE=1 SV=4
P19468	Glutamate--cysteine ligase catalytic subunit OS=Rattus norvegicus OX=10116 GN=Gclc PE=1 SV=2
P48506	Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens OX=9606 GN=GCLC PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001812 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03074 all species →	GCS	Glutamate-cysteine ligase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004308 all species →	Family	Glutamate-cysteine ligase catalytic subunit	Interproscan
IPR014746 all species →	Homologous_superfamily	Glutamine synthetase/guanido kinase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11164 all species →	GLUTAMATE CYSTEINE LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004357 all species →	Molecular Function	glutamate-cysteine ligase activity	Interproscan
GO:0006750 all species →	Biological Process	glutathione biosynthetic process	Interproscan
GO:0017109 all species →	Cellular Component	glutamate-cysteine ligase complex	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031039-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031039-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

151.9Max TPM

41.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	36.58	56.06
polyp at pH7 6	18	18	35.67	54.59
coral polyp · control treatment	16	16	49.47	79.32
coral polyp · oil and dispersant treatment	16	16	56.51	151.95
coral polyp · oil treatment	16	16	41.14	65.80
coral polyp · dispersant treatment	16	16	44.76	112.59
Polyp	10	10	16.21	39.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.48
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.56
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.81
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.39
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.55
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.82
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.71
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.10
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.18
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.92
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.42
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.78
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.25
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.05
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.54
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.68
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	151.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.93
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.35
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.86
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.48
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.96
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	39.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.88
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.