Gene detail

Detailed information of OS493_031041-T1 in Lophelia pertusa

Genomic Location: scaffold_208:139322...141257
NR annotation: KAJ7370626.1, N-acetylaspartate synthetase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001196 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR050769 all species →	Family	Camello N-acetyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13947 all species →	GNAT FAMILY N-ACETYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0008080 all species →	Molecular Function	N-acetyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20838	NAT8; N-acetyltransferase 8	EC:2.3.1.80 EC:2.3.1.-	Glutathione metabolism	ko00480	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031041-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

3,037.4Max TPM

954.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	439.84	911.90
polyp at pH7 6	18	18	1,175.57	3,037.44
coral polyp · control treatment	16	16	1,148.97	2,307.77
coral polyp · oil and dispersant treatment	16	16	1,189.70	2,145.64
coral polyp · oil treatment	16	16	1,170.41	2,211.75
coral polyp · dispersant treatment	16	16	1,089.60	1,961.91
Polyp	10	10	229.38	683.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	911.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	908.50
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	738.55
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	699.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	574.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	566.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	476.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	446.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	363.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	362.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	340.35
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	313.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	246.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	236.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	208.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	197.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	168.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	157.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,037.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,033.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,549.18
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,540.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,772.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,741.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,297.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,283.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	823.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	819.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	512.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	509.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	223.20
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	217.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	206.62
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	206.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	202.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	183.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,307.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,088.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,961.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,439.58
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,243.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,210.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,198.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,083.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	974.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	845.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	818.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	727.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	714.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	697.15
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	570.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	499.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,145.64
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,937.81
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,734.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,493.47
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,414.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,393.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,252.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,161.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,082.39
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,064.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,001.01
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	994.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	681.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	597.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	573.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	508.64
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,211.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,104.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,829.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,418.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,387.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,365.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,221.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,167.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	949.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	914.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	858.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	839.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	796.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	607.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	582.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	471.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,961.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,847.60
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,747.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,456.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,424.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,329.73
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,274.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,268.68
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,112.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,025.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	713.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	607.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	594.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	569.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	374.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	123.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	683.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	263.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	236.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	228.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	214.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	174.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	153.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	150.80
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	116.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	72.05

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.