Gene detail

Detailed information of OS493_031042-T1 in Lophelia pertusa

Genomic Location: scaffold_208:180092...181062
NR annotation: KAJ7370627.1, N-acetylaspartate synthetase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001200 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR050769 all species →	Family	Camello N-acetyltransferase	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13947 all species →	GNAT FAMILY N-ACETYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0008080 all species →	Molecular Function	N-acetyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20838	NAT8; N-acetyltransferase 8	EC:2.3.1.80 EC:2.3.1.-	Glutathione metabolism	ko00480	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031042-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

54.3Max TPM

13.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.08	35.51
polyp at pH7 6	18	17	19.68	44.58
coral polyp · control treatment	16	16	12.65	31.15
coral polyp · oil and dispersant treatment	16	16	13.45	42.05
coral polyp · oil treatment	16	16	12.54	33.32
coral polyp · dispersant treatment	16	16	18.55	54.34
Polyp	10	10	6.39	14.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.16
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.85
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.05
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.07
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.49
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.15
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.80
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.99
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.37
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.72
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.05
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.66
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.82
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.48
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.38
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.03
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.56
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.33
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.22

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.