Gene detail

Detailed information of OS493_031195-T1 in Lophelia pertusa

Genomic Location: scaffold_212:281830...285030
NR annotation: KAJ7383025.1, spermatogenesis-associated C-terminus [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006902 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15743 all species →	SPATA1_C	Spermatogenesis-associated C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039062 all species →	Family	Spermatogenesis-associated protein 1	Interproscan
IPR031478 all species →	Domain	Spermatogenesis-associated protein 1, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14421 all species →	SPERMATOGENESIS-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_031195-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031195-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031195-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

124.9Max TPM

47.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	35.15	68.18
polyp at pH7 6	18	18	28.09	52.44
coral polyp · control treatment	16	16	52.73	85.66
coral polyp · oil and dispersant treatment	16	16	48.01	90.65
coral polyp · oil treatment	16	16	46.96	73.80
coral polyp · dispersant treatment	16	16	77.43	124.91
Polyp	10	10	48.51	106.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.18
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.26
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.24
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.38
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.76
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.42
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.48
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.80
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.13
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.92
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.42
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.14
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.22
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.35
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.65
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.23
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.18
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.40
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.65
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.75
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.26
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.40
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.11
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	124.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.71
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.77
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.07
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	106.12
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	57.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	52.94
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	49.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	42.62
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	41.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	41.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	36.45
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	29.79
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.87

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.