Gene detail

Detailed information of OS493_031198-T1 in Lophelia pertusa

Genomic Location: scaffold_212:315459...330771
NR annotation: KAJ7383028.1, Cysteine-rich protein 2-binding protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CID0	Cysteine-rich protein 2-binding protein OS=Mus musculus OX=10090 GN=Kat14 PE=1 SV=2
Q9H8E8	Cysteine-rich protein 2-binding protein OS=Homo sapiens OX=9606 GN=KAT14 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005326 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20916 all species →	CYSTEINE AND GLYCINE-RICH PROTEIN 2 BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24537	KAT14; cysteine-rich protein 2-binding protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031198-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

11.7Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.91	6.30
polyp at pH7 6	18	16	3.26	5.96
coral polyp · control treatment	16	16	5.09	11.27
coral polyp · oil and dispersant treatment	16	16	3.79	11.67
coral polyp · oil treatment	16	16	4.56	7.14
coral polyp · dispersant treatment	16	16	2.74	5.59
Polyp	10	9	2.80	4.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.02
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.95
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.78
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.51
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.41
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.32
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.98
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.16
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.65
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.