Gene detail

Detailed information of OS493_031227-T1 in Lophelia pertusa

Genomic Location: scaffold_213:28018...29580
NR annotation: KAJ7376955.1, DnaJ sub C member 21 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F1R6	DnaJ homolog subfamily C member 21 OS=Homo sapiens OX=9606 GN=DNAJC21 PE=1 SV=2
E9Q8D0	DnaJ homolog subfamily C member 21 OS=Mus musculus OX=10090 GN=Dnajc21 PE=1 SV=1
Q6PGY5	DnaJ homolog subfamily C member 21 OS=Danio rerio OX=7955 GN=dnajc21 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008368 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan
PF12171 all species →	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR022755 all species →	Domain	Zinc finger, double-stranded RNA binding	Interproscan
IPR018253 all species →	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR051964 all species →	Family	Multifunctional chaperone and stress response protein	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44029 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 21	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09506	DNAJA5; DnaJ homolog subfamily A member 5	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031227-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

141.5Max TPM

37.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.40	22.15
polyp at pH7 6	18	18	17.62	30.96
coral polyp · control treatment	16	16	39.24	126.78
coral polyp · oil and dispersant treatment	16	16	53.53	103.51
coral polyp · oil treatment	16	16	34.12	62.18
coral polyp · dispersant treatment	16	16	82.85	141.52
Polyp	10	10	23.19	55.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.85
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.59
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.48
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.24
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.96
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.34
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.40
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.63
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.52
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.78
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.92
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.84
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.74
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.78
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.91
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.76
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.16
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.47
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.26
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.34
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.59
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	141.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	141.52
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	130.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	127.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	122.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.64
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.23
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.71
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.77
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	55.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	31.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	30.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	24.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.10
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.49
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.63
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.69

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.