Gene detail

Detailed information of OS493_031228-T1 in Lophelia pertusa

Genomic Location: scaffold_213:29967...33005
NR annotation: KAJ7376956.1, hypothetical protein OS493_031228 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2RV13	Sperm axonemal maintenance protein CFAP97D1 OS=Homo sapiens OX=9606 GN=CFAP97D1 PE=1 SV=1
Q9DAN9	Sperm axonemal maintenance protein CFAP97D1 OS=Mus musculus OX=10090 GN=Cfap97d1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006706 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13879 all species →	Hmw_CFAP97	Hemingway/CFA97	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029488 all species →	Family	Hemingway/CFA97	Interproscan
IPR038792 all species →	Family	CFAP97 domain-containing protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33768 all species →	MIP11318P	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_031228-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031228-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031228-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

446.6Max TPM

108.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	54.20	79.12
polyp at pH7 6	18	18	62.03	114.51
coral polyp · control treatment	16	16	127.48	446.59
coral polyp · oil and dispersant treatment	16	16	171.15	296.05
coral polyp · oil treatment	16	16	128.56	242.25
coral polyp · dispersant treatment	16	16	139.86	275.41
Polyp	10	10	79.62	168.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.26
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.51
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.76
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.72
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.61
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	114.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.64
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.73
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.42
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.60
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.14
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.68
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	446.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	215.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	150.55
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	139.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	122.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	122.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.88
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.72
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	296.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	293.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	237.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	234.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	227.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	199.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	195.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	181.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	164.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.83
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	112.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	242.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	205.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	171.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	169.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	163.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	159.55
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	153.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	145.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	133.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.94
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.78
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.36
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.60
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	275.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	242.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	188.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	173.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	170.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	167.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	161.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	146.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	133.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.25
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.77
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	168.68
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	121.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	107.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	74.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	65.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	63.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	60.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	53.34
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	45.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	36.60

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.