Gene detail

Detailed information of OS493_031254-T1 in Lophelia pertusa

Genomic Location: scaffold_213:206190...216831
NR annotation: KAJ7376982.1, hypothetical protein OS493_031254 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K1K4	Centromere protein I OS=Mus musculus OX=10090 GN=Cenpi PE=2 SV=1
Q8AYS7	Centromere protein I OS=Gallus gallus OX=9031 GN=CENPI PE=1 SV=1
Q63517	Centromere protein I OS=Rattus norvegicus OX=10116 GN=Cenpi PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008139 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07778 all species →	CENP-I	Mis6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012485 all species →	Family	Centromere protein I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48208 all species →	CENTROMERE PROTEIN I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0034508 all species →	Biological Process	centromere complex assembly	Interproscan
GO:0000070 all species →	Biological Process	mitotic sister chromatid segregation	Interproscan
GO:0000939 all species →	Cellular Component	inner kinetochore	Interproscan
GO:0034080 all species →	Biological Process	CENP-A containing chromatin assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11501	CENPI; centromere protein I	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031254-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

15.8Max TPM

1.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.19	3.73
polyp at pH7 6	18	15	1.69	3.68
coral polyp · control treatment	16	16	2.54	14.48
coral polyp · oil and dispersant treatment	16	16	2.17	15.83
coral polyp · oil treatment	16	16	1.86	4.89
coral polyp · dispersant treatment	16	16	1.39	3.90
Polyp	10	8	1.70	3.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.64
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.53
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.14
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.81
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.68
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.48
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.42
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.28
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.76
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.23
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.35
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.01
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.84
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.34
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.