Gene detail

Detailed information of OS493_031259-T1 in Lophelia pertusa

Genomic Location: scaffold_213:263015...265350
NR annotation: KAJ7376987.1, hypothetical protein OS493_031259 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D0P0	Emopamil-binding protein-like OS=Mus musculus OX=10090 GN=Ebpl PE=2 SV=1
Q9BY08	Emopamil-binding protein-like OS=Homo sapiens OX=9606 GN=EBPL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011736 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05241 all species →	EBP	EXPERA (EXPanded EBP superfamily)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007905 all species →	Family	Emopamil-binding protein	Interproscan
IPR033118 all species →	Domain	EXPERA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14207 all species →	STEROL ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016125 all species →	Biological Process	sterol metabolic process	Interproscan
GO:0047750 all species →	Molecular Function	cholestenol delta-isomerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01824	EBP; cholestenol Delta-isomerase	EC:5.3.3.5	Steroid biosynthesis	ko00100	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031259-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

20.1Max TPM

7.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.61	20.06
polyp at pH7 6	18	16	8.06	15.43
coral polyp · control treatment	16	16	9.13	18.86
coral polyp · oil and dispersant treatment	16	16	8.27	19.64
coral polyp · oil treatment	16	16	8.05	17.51
coral polyp · dispersant treatment	16	16	6.46	14.68
Polyp	10	9	5.09	17.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.06
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.76
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.82
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.08
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.01
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.84
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.58
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.24
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.43
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.66
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.57
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.05
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.43
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.86
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.11
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.86
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.22
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.40
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.38
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.84
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.78
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.49
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.62
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.61
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.98
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.89
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.81
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.26
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.15
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.46
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.28
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.