Gene detail

Detailed information of OS493_031260-T1 in Lophelia pertusa

Genomic Location: scaffold_213:266800...273003
NR annotation: KAJ7376988.1, Calcium-binding protein 39-like [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P91891	Protein Mo25 OS=Drosophila melanogaster OX=7227 GN=Mo25 PE=2 SV=2
Q29RI6	Calcium-binding protein 39 OS=Bos taurus OX=9913 GN=CAB39 PE=2 SV=1
Q9Y376	Calcium-binding protein 39 OS=Homo sapiens OX=9606 GN=CAB39 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006779 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08569 all species →	Mo25	Mo25-like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013878 all species →	Family	Mo25-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10182 all species →	CALCIUM-BINDING PROTEIN 39-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0043539 all species →	Molecular Function	protein serine/threonine kinase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08272	CAB39, MO25; calcium binding protein 39	-	mTOR signaling pathway	ko04150	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031260-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

63.4Max TPM

28.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.18	33.05
polyp at pH7 6	18	16	18.84	30.82
coral polyp · control treatment	16	16	35.27	53.06
coral polyp · oil and dispersant treatment	16	16	44.22	63.44
coral polyp · oil treatment	16	16	28.00	54.14
coral polyp · dispersant treatment	16	16	36.79	57.88
Polyp	10	10	19.60	42.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.48
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.89
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.78
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.71
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.71
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.32
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.41
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.07
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.12
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.27
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.53
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.86
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.08
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.22
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.36
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.66
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.49
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.75
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.05
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.38
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.97
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.67
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.82
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.75
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.83
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.88
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.92
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.43
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.20
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	42.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	24.69
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.45
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.17
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.55

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.