Gene detail

Detailed information of OS493_031329-T1 in Lophelia pertusa

Genomic Location: scaffold_214:343740...344992
NR annotation: KAJ7370593.1, hypothetical protein OS493_031329 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002900 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19518 all species →	RhoGAP_pG1_pG2	p190RhoGAP, pG1 and pG2 domains	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051978 all species →	Family	Rho GTPase-activating domain-containing protein	Interproscan
IPR045786 all species →	Domain	Rho GTPase-activating protein, pG1 and pG2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46005 all species →	RHO GTPASE-ACTIVATING PROTEIN 190	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0008361 all species →	Biological Process	regulation of cell size	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031329-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031329-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

80.8Max TPM

18.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.22	22.98
polyp at pH7 6	18	18	14.78	24.57
coral polyp · control treatment	16	16	16.78	24.68
coral polyp · oil and dispersant treatment	16	16	21.25	32.93
coral polyp · oil treatment	16	16	14.16	21.87
coral polyp · dispersant treatment	16	16	39.69	80.82
Polyp	10	9	5.44	10.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.58
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.45
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.86
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.38
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.29
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.19
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.69
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.17
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.43
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.47
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.18
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.35
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.31
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.20
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.72
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.53
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.37
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.