Gene detail

Detailed information of OS493_031383-T1 in Lophelia pertusa

Genomic Location: scaffold_216:246516...248394
NR annotation: KAJ7323460.1, hypothetical protein OS493_031383 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010330 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR045188 all species →	Family	PH domain containing protein Boi1/Boi2-like	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22902 all species →	SESQUIPEDALIAN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001881 all species →	Biological Process	receptor recycling	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0055037 all species →	Cellular Component	recycling endosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23791	PHETA; sesquipedalian	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031383-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

74.1Max TPM

12.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.79	24.09
polyp at pH7 6	18	18	11.65	15.83
coral polyp · control treatment	16	16	17.11	66.17
coral polyp · oil and dispersant treatment	16	16	14.30	74.12
coral polyp · oil treatment	16	16	14.96	25.47
coral polyp · dispersant treatment	16	16	7.22	13.41
Polyp	10	9	11.07	21.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.09
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.62
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.16
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.15
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.65
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.52
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.61
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.17
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.92
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.61
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.43
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.59
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.98
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.80
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.34
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.99
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.46
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.95
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.13
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.