Gene detail

Detailed information of OS493_031443-T1 in Lophelia pertusa

Genomic Location: scaffold_217:351552...357549
NR annotation: KAJ7389473.1, Mitochondrial import receptor subunit TOM40B [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P825	Mitochondrial import receptor subunit TOM40 homolog OS=Xenopus tropicalis OX=8364 GN=tomm40 PE=2 SV=1
Q7ZTM6	Mitochondrial import receptor subunit TOM40 homolog OS=Xenopus laevis OX=8355 GN=tomm40 PE=2 SV=1
Q1LZB5	Mitochondrial import receptor subunit TOM40 homolog OS=Bos taurus OX=9913 GN=TOMM40 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008886 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01459 all species →	Porin_3	Eukaryotic porin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037930 all species →	Family	Tom40	Interproscan
IPR027246 all species →	Family	Eukaryotic porin/Tom40	Interproscan
IPR023614 all species →	Homologous_superfamily	Porin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10802 all species →	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0008320 all species →	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0030150 all species →	Biological Process	protein import into mitochondrial matrix	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005742 all species →	Cellular Component	mitochondrial outer membrane translocase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11518	TOM40; mitochondrial import receptor subunit TOM40	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031443-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

66.1Max TPM

23.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.27	35.04
polyp at pH7 6	18	18	32.46	46.46
coral polyp · control treatment	16	16	24.10	56.48
coral polyp · oil and dispersant treatment	16	16	18.38	32.73
coral polyp · oil treatment	16	16	18.43	43.90
coral polyp · dispersant treatment	16	16	17.56	52.64
Polyp	10	10	30.99	66.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.76
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.90
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.73
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.02
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.46
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.18
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.42
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.36
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.32
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.13
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.48
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.34
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.56
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.73
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.64
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.73
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.85
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.64
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.26
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.48
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	66.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	53.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	50.86
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	47.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	34.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.89

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.