Gene detail

Detailed information of OS493_031444-T1 in Lophelia pertusa

Genomic Location: scaffold_217:359125...369271
NR annotation: KAJ7389474.1, nucleolar zinc-finger protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75312	Zinc finger protein ZPR1 OS=Homo sapiens OX=9606 GN=ZPR1 PE=1 SV=1
Q62384	Zinc finger protein ZPR1 OS=Mus musculus OX=10090 GN=Zpr1 PE=1 SV=1
A9CB27	Zinc finger protein ZPR1 OS=Papio anubis OX=9555 GN=ZNF259 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004639 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03367 all species →	zf-ZPR1	ZPR1 zinc-finger domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042452 all species →	Homologous_superfamily	ZPR1, zinc finger domain	Interproscan
IPR004457 all species →	Domain	Zinc finger, ZPR1-type	Interproscan
IPR040141 all species →	Family	ZPR1 family	Interproscan
IPR042451 all species →	Homologous_superfamily	ZPR1, A/B domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10876 all species →	ZINC FINGER PROTEIN ZPR1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06874	ZPR1; zinc finger protein ZPR1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031444-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

68.6Max TPM

16.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.75	27.12
polyp at pH7 6	18	18	21.11	39.18
coral polyp · control treatment	16	16	16.60	29.29
coral polyp · oil and dispersant treatment	16	16	14.64	18.82
coral polyp · oil treatment	16	16	15.66	23.76
coral polyp · dispersant treatment	16	16	10.95	19.19
Polyp	10	10	24.56	68.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.66
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.61
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.82
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.29
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.18
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.11
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.97
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.75
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.40
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.29
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.83
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.88
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.40
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.90
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.78
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.50
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.13
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.72
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.88
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.01
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	68.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	35.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	30.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.27

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.