Gene detail

Detailed information of OS493_031445-T1 in Lophelia pertusa

Genomic Location: scaffold_217:369967...373761
NR annotation: KAJ7389475.1, hypothetical protein OS493_031445 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008984 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15261 all species →	JHY	Jhy protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027968 all species →	Family	Jhy protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14726 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035082 all species →	Biological Process	axoneme assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031445-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031445-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

28.3Max TPM

6.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.53	8.17
polyp at pH7 6	18	18	6.15	13.25
coral polyp · control treatment	16	16	9.14	28.35
coral polyp · oil and dispersant treatment	16	16	8.26	19.74
coral polyp · oil treatment	16	16	8.60	14.17
coral polyp · dispersant treatment	16	16	3.54	8.64
Polyp	10	10	5.83	8.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.88
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.47
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.01
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.07
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.35
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.53
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.58
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.64
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.51
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.03
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.64
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.16
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.98
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.38
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.02

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.