Gene detail

Detailed information of OS493_031473-T1 in Lophelia pertusa

Genomic Location: scaffold_218:2066...5254
NR annotation: KAJ7382971.1, hypothetical protein OS493_031473 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001018 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09412 all species →	XendoU	Endoribonuclease XendoU	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037227 all species →	Homologous_superfamily	Endoribonuclease EndoU-like	Interproscan
IPR018998 all species →	Domain	EndoU ribonuclease, C-terminal	Interproscan
IPR039787 all species →	Family	Poly(U)-specific endoribonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12439 all species →	PLACENTAL PROTEIN 11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031473-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031473-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

94TPM > 0

7Conditions

78.4Max TPM

6.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	5.17	14.39
polyp at pH7 6	18	13	16.01	78.39
coral polyp · control treatment	16	15	4.95	13.31
coral polyp · oil and dispersant treatment	16	14	4.56	20.43
coral polyp · oil treatment	16	15	7.27	42.06
coral polyp · dispersant treatment	16	15	3.21	8.72
Polyp	10	6	0.89	4.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.39
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.36
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.55
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.97
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.34
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.02
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.06
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.35
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.01
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.93
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.