Gene detail

Detailed information of OS493_031491-T1 in Lophelia pertusa

Genomic Location: scaffold_218:450780...471631
NR annotation: KAJ7382989.1, hypothetical protein OS493_031491 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60602	Toll-like receptor 5 OS=Homo sapiens OX=9606 GN=TLR5 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR042342 all species →	Family	Tetratricopeptide repeat protein 22	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16253 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 22	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031491-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031491-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

123.2Max TPM

24.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.12	13.65
polyp at pH7 6	18	18	12.55	19.39
coral polyp · control treatment	16	16	22.98	34.15
coral polyp · oil and dispersant treatment	16	16	42.49	105.10
coral polyp · oil treatment	16	16	31.34	66.26
coral polyp · dispersant treatment	16	16	42.74	123.22
Polyp	10	9	2.49	6.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.65
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.20
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.43
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.14
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.72
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.80
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.33
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.15
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.83
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.53
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.16
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.34
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.11
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.41
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.97
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.44
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.10
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	123.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.01
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.70
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.60
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.12
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.