Gene detail

Detailed information of OS493_031494-T1 in Lophelia pertusa

Genomic Location: scaffold_218:567294...582323
NR annotation: KAJ7382992.1, hypothetical protein OS493_031494 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001233 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08357 all species →	SEFIR	SEFIR domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013568 all species →	Domain	SEFIR domain	Interproscan
IPR039465 all species →	Family	Interleukin-17 receptor-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15583 all species →	INTERLEUKIN-17 RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030368 all species →	Molecular Function	interleukin-17 receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031494-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031494-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

101.0Max TPM

43.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.60	38.31
polyp at pH7 6	18	18	25.52	40.69
coral polyp · control treatment	16	16	55.54	95.48
coral polyp · oil and dispersant treatment	16	16	72.83	101.04
coral polyp · oil treatment	16	16	57.49	92.30
coral polyp · dispersant treatment	16	16	47.56	67.88
Polyp	10	10	15.31	37.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.31
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.06
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.89
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.71
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.72
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.40
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.90
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.38
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.25
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.31
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.65
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.56
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.64
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.60
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.04
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.75
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.17
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.30
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.54
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.20
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.37
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.37
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	37.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.01
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.84
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.05

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.