Gene detail

Detailed information of OS493_031557-T1 in Lophelia pertusa

Genomic Location: scaffold_220:351987...353294
NR annotation: KAJ7370551.1, spermatogenesis-associated protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008604 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21388 all species →	SPATA2_PUB-like	Spermatogenesis-associated protein 2, PUB-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048839 all species →	Domain	Spermatogenesis-associated protein 2, PUB-like domain	Interproscan
IPR036339 all species →	Homologous_superfamily	PUB-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15326 all species →	SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031557-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031557-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

23.2Max TPM

6.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.73	8.33
polyp at pH7 6	18	15	3.21	7.82
coral polyp · control treatment	16	16	9.26	18.04
coral polyp · oil and dispersant treatment	16	15	7.31	15.17
coral polyp · oil treatment	16	16	5.58	11.73
coral polyp · dispersant treatment	16	14	10.87	23.24
Polyp	10	9	2.21	4.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.66
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.98
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.81
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.97
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.38
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.42
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.42
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.72
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.39
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.94
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.93
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.38
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.98
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.25
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.21
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.67
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.75
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.71
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.08
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.75
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.19
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.64
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.