Gene detail

Detailed information of OS493_031581-T1 in Lophelia pertusa

Genomic Location: scaffold_221:235275...236605
NR annotation: KAJ7353874.1, Pecanex-like protein 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5HZQ9	Pecanex-like protein 4 OS=Xenopus laevis OX=8355 GN=pcnx4 PE=2 SV=1
A2RUW7	Pecanex-like protein 4 OS=Danio rerio OX=7955 GN=pcnx4 PE=2 SV=1
Q63HM2	Pecanex-like protein 4 OS=Homo sapiens OX=9606 GN=PCNX4 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007177 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05041 all species →	Pecanex_C	Pecanex protein (C-terminus)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039797 all species →	Family	Protein Pecanex	Interproscan
IPR007735 all species →	Domain	Pecanex, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12372 all species →	PECANEX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031581-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031581-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

92TPM > 0

7Conditions

9.4Max TPM

2.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.47	9.44
polyp at pH7 6	18	15	3.56	6.26
coral polyp · control treatment	16	14	1.41	6.37
coral polyp · oil and dispersant treatment	16	14	0.94	2.05
coral polyp · oil treatment	16	16	1.20	3.22
coral polyp · dispersant treatment	16	10	0.57	1.74
Polyp	10	7	1.28	3.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.44
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.92
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.02
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.21
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.24
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.11
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.51
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.99
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.53
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.32
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.05
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.99
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.86
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.64
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.58
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.45
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.36
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.16
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.