Gene detail

Detailed information of OS493_031604-T1 in Lophelia pertusa

Genomic Location: scaffold_221:463278...464735
NR annotation: KAJ7353897.1, hypothetical protein OS493_031604 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76HN1	Hyaluronidase-1 OS=Rattus norvegicus OX=10116 GN=Hyal1 PE=2 SV=1
Q5E985	Hyaluronidase-1 OS=Bos taurus OX=9913 GN=HYAL1 PE=2 SV=1
Q12794	Hyaluronidase-1 OS=Homo sapiens OX=9606 GN=HYAL1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002185 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01630 all species →	Glyco_hydro_56	Hyaluronidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018155 all species →	Family	Hyaluronidase	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11769 all species →	HYALURONIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004415 all species →	Molecular Function	hyalurononglucosaminidase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030214 all species →	Biological Process	hyaluronan catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031604-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031604-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

29.9Max TPM

11.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.80	22.41
polyp at pH7 6	18	18	12.37	17.70
coral polyp · control treatment	16	16	13.57	29.85
coral polyp · oil and dispersant treatment	16	15	7.86	17.09
coral polyp · oil treatment	16	16	12.97	23.84
coral polyp · dispersant treatment	16	16	10.28	22.98
Polyp	10	10	12.80	21.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.20
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.43
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.44
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.47
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.15
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.02
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.52
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.46
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.34
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.38
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.88
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.85
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.94
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.27
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.83
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.24
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.73
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.60
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.39
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.38
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.30
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.39
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.02
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.57
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.34
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.52
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.41
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.24
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.16
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.98
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.44

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.