Gene detail

Detailed information of OS493_031673-T1 in Lophelia pertusa

Genomic Location: scaffold_223:331189...333956
NR annotation: KAJ7389429.1, hypothetical protein OS493_031673 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZK09	Protein Hikeshi OS=Gallus gallus OX=9031 GN=HIKESHI PE=2 SV=2
Q9DD02	Protein Hikeshi OS=Mus musculus OX=10090 GN=Hikeshi PE=1 SV=1
Q5M808	Protein Hikeshi OS=Rattus norvegicus OX=10116 GN=Hikeshi PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008080 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05603 all species →	Hikeshi-like_N	Hikeshi-like, N-terminal domain	Domain	Interproscan
PF21057 all species →	Hikeshi-like_C	Hikeshi-like, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008493 all species →	Domain	Hikeshi-like, N-terminal domain	Interproscan
IPR031318 all species →	Family	OPI10 family	Interproscan
IPR048364 all species →	Domain	Hikeshi-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12925 all species →	HIKESHI FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0030544 all species →	Molecular Function	Hsp70 protein binding	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23327	HIKESHI; protein Hikeshi	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031673-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

12.7Max TPM

5.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.39	12.69
polyp at pH7 6	18	18	6.35	10.97
coral polyp · control treatment	16	16	5.87	12.45
coral polyp · oil and dispersant treatment	16	15	3.77	9.28
coral polyp · oil treatment	16	16	5.95	10.47
coral polyp · dispersant treatment	16	16	4.79	9.63
Polyp	10	9	3.78	7.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.48
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.39
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.42
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.19
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.10
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.69
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.73
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.37
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.91
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.22
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.97
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.12
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.40
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.67
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.62
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.