Gene detail

Detailed information of OS493_031730-T1 in Lophelia pertusa

Genomic Location: scaffold_224:446184...449189
NR annotation: KAJ7382954.1, hypothetical protein OS493_031730 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004438 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_031730-T1 in Lophelia pertusa.

InterPro

No InterPro signature was recorded for OS493_031730-T1 in Lophelia pertusa.

PANTHER

PANTHER term	Description	Source
PTHR23093 all species →	SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_031730-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031730-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031730-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

28.8Max TPM

12.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.91	28.78
polyp at pH7 6	18	17	13.38	19.56
coral polyp · control treatment	16	16	14.91	21.32
coral polyp · oil and dispersant treatment	16	16	9.64	16.24
coral polyp · oil treatment	16	16	13.06	20.73
coral polyp · dispersant treatment	16	16	7.79	19.08
Polyp	10	9	12.90	22.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.78
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.07
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.62
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.14
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.08
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.46
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.21
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.57
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.77
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.56
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.14
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.45
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.15
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.03
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.36
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.75
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.57
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.54
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.49
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.19
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.57
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.54
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.23
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.35
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.17
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.94
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.61
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.64
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.34
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.