Gene detail

Detailed information of OS493_031732-T1 in Lophelia pertusa

Genomic Location: scaffold_224:453920...457640
NR annotation: KAJ7382956.1, hypothetical protein OS493_031732 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004438 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_031732-T1 in Lophelia pertusa.

InterPro

No InterPro signature was recorded for OS493_031732-T1 in Lophelia pertusa.

PANTHER

PANTHER term	Description	Source
PTHR23093 all species →	SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_031732-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031732-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031732-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

17.5Max TPM

6.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.30	11.51
polyp at pH7 6	18	18	6.37	9.30
coral polyp · control treatment	16	16	8.77	17.49
coral polyp · oil and dispersant treatment	16	16	5.64	12.48
coral polyp · oil treatment	16	16	7.95	14.51
coral polyp · dispersant treatment	16	16	6.68	12.54
Polyp	10	9	3.59	7.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.51
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.92
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.83
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.99
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.09
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.44
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.49
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.03
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.69
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.45
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.10
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.29
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.75
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.82
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.45
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.74
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.98
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.59
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.54
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.67
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.