Gene detail

Detailed information of OS493_031738-T1 in Lophelia pertusa

Genomic Location: scaffold_224:506979...510028
NR annotation: KAJ7382962.1, MORN repeat-containing protein 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28FE4	MORN repeat-containing protein 5 OS=Xenopus tropicalis OX=8364 GN=morn5 PE=2 SV=1
Q32LL6	MORN repeat-containing protein 5 OS=Bos taurus OX=9913 GN=MORN5 PE=2 SV=1
Q5VZ52	MORN repeat-containing protein 5 OS=Homo sapiens OX=9606 GN=MORN5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003183 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042814 all species →	Family	MORN repeat-containing protein 5	Interproscan
IPR003409 all species →	Repeat	MORN repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46437 all species →	MORN REPEAT-CONTAINING PROTEIN 5	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_031738-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031738-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031738-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

63.9Max TPM

23.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.22	31.96
polyp at pH7 6	18	18	21.55	29.28
coral polyp · control treatment	16	16	27.59	51.78
coral polyp · oil and dispersant treatment	16	16	25.68	63.91
coral polyp · oil treatment	16	16	27.38	41.22
coral polyp · dispersant treatment	16	16	20.41	41.41
Polyp	10	10	23.01	34.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.10
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.86
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.80
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.75
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.36
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.97
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.59
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.75
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.53
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.66
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.25
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.08
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.31
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.27
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.13
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.83
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.12
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.28
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.73
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.30
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.13
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.45
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.59
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.98
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.45
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.16
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.68
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.68
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.67
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.72
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.38
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.79
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.17
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.94
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.55
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	33.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.59
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.54

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.