Gene detail

Detailed information of OS493_031850-T1 in Lophelia pertusa

Genomic Location: scaffold_228:19251...24860
NR annotation: KAJ7323375.1, Intraflagellar transport protein 57 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BXG3	Intraflagellar transport protein 57 homolog OS=Mus musculus OX=10090 GN=Ift57 PE=1 SV=1
Q5EA95	Intraflagellar transport protein 57 homolog OS=Bos taurus OX=9913 GN=IFT57 PE=1 SV=1
Q9NWB7	Intraflagellar transport protein 57 homolog OS=Homo sapiens OX=9606 GN=IFT57 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005268 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10498 all species →	IFT57	Intra-flagellar transport protein 57	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019530 all species →	Family	Intra-flagellar transport protein 57	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16011 all species →	IFT57/HIPPI	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04638	IFT57, HIPPI, ESRRBL1; intraflagellar transport protein 57	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031850-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

37.4Max TPM

21.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.72	26.98
polyp at pH7 6	18	18	18.90	28.33
coral polyp · control treatment	16	16	26.28	37.37
coral polyp · oil and dispersant treatment	16	16	22.50	32.78
coral polyp · oil treatment	16	16	25.17	37.18
coral polyp · dispersant treatment	16	16	17.82	31.39
Polyp	10	10	17.90	34.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.55
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.09
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.68
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.71
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.50
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.06
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.06
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.30
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.90
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.37
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.44
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.91
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.78
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.68
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.72
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.62
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.95
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.64
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.61
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.53
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.35
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.59
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.77

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.