Gene detail

Detailed information of OS493_031883-T1 in Lophelia pertusa

Genomic Location: scaffold_228:475126...476273
NR annotation: KAJ7323408.1, hypothetical protein OS493_031883 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BLJ6	BAG domain-containing protein Samui OS=Bombyx mori OX=7091 GN=Samui PE=2 SV=1
Q9UL15	BAG family molecular chaperone regulator 5 OS=Homo sapiens OX=9606 GN=BAG5 PE=1 SV=1
Q2TA08	BAG family molecular chaperone regulator 5 OS=Bos taurus OX=9913 GN=BAG5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001677 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02179 all species →	BAG	BAG domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036533 all species →	Homologous_superfamily	BAG domain superfamily	Interproscan
IPR003103 all species →	Domain	BAG domain	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_031883-T1 in Lophelia pertusa.

Gene Ontology

GO term	Category	Description	Source
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031883-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031883-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

64.5Max TPM

29.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.10	26.00
polyp at pH7 6	18	18	22.38	28.09
coral polyp · control treatment	16	16	37.49	61.76
coral polyp · oil and dispersant treatment	16	16	46.98	64.49
coral polyp · oil treatment	16	16	31.38	43.51
coral polyp · dispersant treatment	16	16	28.33	56.31
Polyp	10	10	20.02	29.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.63
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.46
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.18
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.96
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.73
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.57
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.74
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.85
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.56
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.38
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.46
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.91
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.16
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.66
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.96
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.11
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.71
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.32
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.88
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.97
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	29.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	22.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	17.22
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.21
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.24

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.