Gene detail

Detailed information of OS493_031954-T1 in Lophelia pertusa

Genomic Location: scaffold_230:310069...317346
NR annotation: KAJ7382896.1, hypothetical protein OS493_031954 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BLR9	Hypoxia-inducible factor 1-alpha inhibitor OS=Mus musculus OX=10090 GN=Hif1an PE=1 SV=2
Q9NWT6	Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens OX=9606 GN=HIF1AN PE=1 SV=2
P59723	Hypoxia-inducible factor 1-alpha inhibitor OS=Danio rerio OX=7955 GN=hif1an PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002182 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12461 all species →	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016706 all species →	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan
GO:0036139 all species →	Molecular Function	peptidyl-histidine dioxygenase activity	Interproscan
GO:0036140 all species →	Molecular Function	[protein]-asparagine 3-dioxygenase activity	Interproscan
GO:0042265 all species →	Biological Process	obsolete peptidyl-asparagine hydroxylation	Interproscan
GO:0045746 all species →	Biological Process	negative regulation of Notch signaling pathway	Interproscan
GO:0071532 all species →	Molecular Function	ankyrin repeat binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031954-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031954-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

8.5Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.43	5.27
polyp at pH7 6	18	14	2.41	5.15
coral polyp · control treatment	16	16	2.18	3.74
coral polyp · oil and dispersant treatment	16	15	1.89	4.88
coral polyp · oil treatment	16	15	1.59	2.60
coral polyp · dispersant treatment	16	16	2.45	6.93
Polyp	10	7	2.12	8.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.54
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.66
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.03
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.43
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.46
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.20
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.43
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.60
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.42
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.80
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.48
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.