Gene detail

Detailed information of OS493_031957-T1 in Lophelia pertusa

Genomic Location: scaffold_230:345648...351853
NR annotation: KAJ7382899.1, nifu-like protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UMS0	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Homo sapiens OX=9606 GN=NFU1 PE=1 SV=2
B3NYF7	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila erecta OX=7220 GN=GG17526 PE=3 SV=1
B4PZ52	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila yakuba OX=7245 GN=GE15286 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005217 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08712 all species →	Nfu_N	Scaffold protein Nfu/NifU N terminal	Domain	Interproscan
PF01106 all species →	NifU	NifU-like domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036498 all species →	Homologous_superfamily	Scaffold protein Nfu/NifU, N-terminal domain superfamily	Interproscan
IPR014824 all species →	Domain	Scaffold protein Nfu/NifU, N-terminal	Interproscan
IPR034904 all species →	Homologous_superfamily	Fe-S cluster assembly domain superfamily	Interproscan
IPR001075 all species →	Domain	NIF system FeS cluster assembly, NifU, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11178 all species →	IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0097428 all species →	Biological Process	protein maturation by iron-sulfur cluster transfer	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22074	NFU1, HIRIP5; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031957-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

44.7Max TPM

11.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.43	27.18
polyp at pH7 6	18	18	14.91	21.77
coral polyp · control treatment	16	16	12.03	44.67
coral polyp · oil and dispersant treatment	16	16	8.35	40.02
coral polyp · oil treatment	16	16	8.88	16.47
coral polyp · dispersant treatment	16	16	4.84	10.65
Polyp	10	10	11.84	20.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.06
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.12
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.22
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.36
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.45
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.66
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.61
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.34
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.72
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.18
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.02
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.66
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.15
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.16
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.74
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.18
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.70
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.89
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.54
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.