Gene detail

Detailed information of OS493_031994-T1 in Lophelia pertusa

Genomic Location: scaffold_231:92685...96120
NR annotation: KAJ7376846.1, Mitochondrial inner membrane protease ATP23 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T0P7	Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus laevis OX=8355 GN=atp23 PE=2 SV=1
Q5BKJ4	Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus tropicalis OX=8364 GN=atp23 PE=2 SV=1
Q9Y6H3	Mitochondrial inner membrane protease ATP23 homolog OS=Homo sapiens OX=9606 GN=ATP23 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005325 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09768 all species →	Peptidase_M76	Peptidase M76 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019165 all species →	Family	Peptidase M76, ATP23	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21711 all species →	MITOCHONDRIAL INNER MEMBRANE PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0033615 all species →	Biological Process	mitochondrial proton-transporting ATP synthase complex assembly	Interproscan
GO:0034982 all species →	Biological Process	mitochondrial protein processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18156	ATP23, XRCC6BP1; mitochondrial inner membrane protease ATP23	EC:3.4.24.-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031994-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

34.8Max TPM

11.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.92	17.41
polyp at pH7 6	18	18	12.43	20.29
coral polyp · control treatment	16	16	11.71	32.47
coral polyp · oil and dispersant treatment	16	16	13.58	22.23
coral polyp · oil treatment	16	16	11.31	20.38
coral polyp · dispersant treatment	16	16	7.71	19.49
Polyp	10	10	18.40	34.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.76
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.87
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.13
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.44
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.55
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.57
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.48
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.12
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.31
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.57
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.49
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.30
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.78
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	34.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	25.71
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.12
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	22.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.88

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.