Gene detail

Detailed information of OS493_031996-T1 in Lophelia pertusa

Genomic Location: scaffold_231:107686...130866
NR annotation: KAJ7376848.1, hypothetical protein OS493_031996 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1U8QWA2	Glycine betaine reductase ATRR OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ATRR PE=1 SV=1
Q6G6J1	Uncharacterized oxidoreductase SAS2370 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS2370 PE=3 SV=1
Q8NUV9	Uncharacterized oxidoreductase MW2403 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW2403 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002098 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR020904 all species →	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43086 all species →	VERY-LONG-CHAIN 3-OXOOACYL-COA REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030497 all species →	Biological Process	fatty acid elongation	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031996-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031996-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

94TPM > 0

7Conditions

15.1Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	1.81	7.66
polyp at pH7 6	18	12	1.76	5.60
coral polyp · control treatment	16	16	4.80	8.79
coral polyp · oil and dispersant treatment	16	15	3.98	12.32
coral polyp · oil treatment	16	16	5.39	15.14
coral polyp · dispersant treatment	16	15	2.65	5.27
Polyp	10	8	3.16	11.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.53
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.02
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.03
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.08
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.76
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.91
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.91
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.29
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.99
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.44
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.13
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.