Gene detail

Detailed information of OS493_031999-T1 in Lophelia pertusa

Genomic Location: scaffold_231:175272...176102
NR annotation: KAJ7376851.1, Beta-galactosidase-1-like protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23780	Beta-galactosidase OS=Mus musculus OX=10090 GN=Glb1 PE=1 SV=1
Q9TRY9	Beta-galactosidase OS=Canis lupus familiaris OX=9615 GN=GLB1 PE=1 SV=3
Q58D55	Beta-galactosidase OS=Bos taurus OX=9913 GN=GLB1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000517 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21467 all species →	BetaGal_gal-bd	Beta-galactosidase, galactose-binding domain	Domain	Interproscan
PF21317 all species →	BetaGal_ABD_1	Beta-galactosidase, first all-beta domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048913 all species →	Domain	Beta-galactosidase, galactose-binding domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR048912 all species →	Domain	Beta-galactosidase 1-like , first all-beta domain	Interproscan
IPR001944 all species →	Family	Glycoside hydrolase, family 35	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23421 all species →	BETA-GALACTOSIDASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004565 all species →	Molecular Function	beta-galactosidase activity	Interproscan
GO:0005773 all species →	Cellular Component	vacuole	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_031999-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_031999-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

7.2Max TPM

1.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.64	5.01
polyp at pH7 6	18	17	2.63	7.16
coral polyp · control treatment	16	16	0.68	1.61
coral polyp · oil and dispersant treatment	16	13	0.43	1.98
coral polyp · oil treatment	16	15	0.66	1.46
coral polyp · dispersant treatment	16	14	0.44	1.71
Polyp	10	9	0.60	1.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.01
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.09
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.05
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.35
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.50
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.13
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.08
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.61
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.73
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.64
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.55
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.02
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.45
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.17
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.13
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.35
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.