Gene detail

Detailed information of OS493_032009-T1 in Lophelia pertusa

Genomic Location: scaffold_231:307515...309182
NR annotation: KAJ7376861.1, Beta-galactosidase-1-like protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23780	Beta-galactosidase OS=Mus musculus OX=10090 GN=Glb1 PE=1 SV=1
Q58D55	Beta-galactosidase OS=Bos taurus OX=9913 GN=GLB1 PE=2 SV=1
Q5R7P4	Beta-galactosidase OS=Pongo abelii OX=9601 GN=GLB1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000517 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21317 all species →	BetaGal_ABD_1	Beta-galactosidase, first all-beta domain	Domain	Interproscan
PF01301 all species →	Glyco_hydro_35	Glycosyl hydrolases family 35	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019801 all species →	Conserved_site	Glycoside hydrolase, family 35, conserved site	Interproscan
IPR001944 all species →	Family	Glycoside hydrolase, family 35	Interproscan
IPR026283 all species →	Family	Beta-galactosidase 1-like	Interproscan
IPR048912 all species →	Domain	Beta-galactosidase 1-like , first all-beta domain	Interproscan
IPR031330 all species →	Domain	Glycoside hydrolase 35, catalytic domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23421 all species →	BETA-GALACTOSIDASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004565 all species →	Molecular Function	beta-galactosidase activity	Interproscan
GO:0005773 all species →	Cellular Component	vacuole	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032009-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032009-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

11.0Max TPM

3.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.13	7.75
polyp at pH7 6	18	18	2.98	6.12
coral polyp · control treatment	16	16	5.10	8.98
coral polyp · oil and dispersant treatment	16	16	3.28	7.56
coral polyp · oil treatment	16	16	4.90	10.95
coral polyp · dispersant treatment	16	16	2.20	6.06
Polyp	10	9	1.51	3.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.75
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.37
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.90
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.86
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.53
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.83
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.56
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.91
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.76
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.39
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.84
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.04
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.26
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.26
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.