Gene detail

Detailed information of OS493_032021-T1 in Lophelia pertusa

Genomic Location: scaffold_231:617224...622318
NR annotation: KAJ7376869.1, Coiled-coil domain-containing protein 22, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RNG8	Coiled-coil domain-containing protein 22 homolog OS=Nematostella vectensis OX=45351 GN=v1g180167 PE=3 SV=1
Q4V909	Coiled-coil domain-containing protein 22 OS=Danio rerio OX=7955 GN=ccdc22 PE=2 SV=1
Q9JIG7	Coiled-coil domain-containing protein 22 OS=Mus musculus OX=10090 GN=Ccdc22 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004755 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05667 all species →	CCDC22_CC	CCDC22 protein coiled-coil region	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008530 all species →	Family	Coiled-coil domain-containing protein 22	Interproscan
IPR048348 all species →	Domain	CCDC22, coiled-coil domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15668 all species →	JM1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan
GO:2000060 all species →	Biological Process	positive regulation of ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032021-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032021-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

97TPM > 0

7Conditions

60.0Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	5.67	11.44
polyp at pH7 6	18	12	5.89	13.38
coral polyp · control treatment	16	15	6.36	13.65
coral polyp · oil and dispersant treatment	16	16	6.06	19.36
coral polyp · oil treatment	16	16	6.09	13.27
coral polyp · dispersant treatment	16	16	3.54	8.85
Polyp	10	8	12.21	60.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.59
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.38
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.16
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.55
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.81
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.74
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.34
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.25
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.34
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.27
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.09
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.53
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.83
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.72
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.83
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.94
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	60.02
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.52
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.95
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.43
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.