Gene detail

Detailed information of OS493_032038-T1 in Lophelia pertusa

Genomic Location: scaffold_232:250825...252072
NR annotation: KAJ7370473.1, tetratricopeptide repeat [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5I0X7	Tetratricopeptide repeat protein 32 OS=Homo sapiens OX=9606 GN=TTC32 PE=1 SV=1
Q9DAC7	Tetratricopeptide repeat protein 32 OS=Mus musculus OX=10090 GN=Ttc32 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011340 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47059 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 32	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24946	TTC32; tetratricopeptide repeat protein 32	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032038-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

30.7Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	8.01	13.44
polyp at pH7 6	18	17	7.79	14.01
coral polyp · control treatment	16	16	9.16	25.04
coral polyp · oil and dispersant treatment	16	16	6.26	30.73
coral polyp · oil treatment	16	16	7.96	16.19
coral polyp · dispersant treatment	16	15	2.50	4.85
Polyp	10	9	8.45	20.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.56
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.72
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.21
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.01
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.19
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.51
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.76
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.37
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.17
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.82
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.10
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.35
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.78
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.92
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.47
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.85
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.33
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.