Gene detail

Detailed information of OS493_032054-T1 in Lophelia pertusa

Genomic Location: scaffold_232:336846...347097
NR annotation: KAJ7370488.1, hypothetical protein OS493_032054 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NQB0	Transcription factor 7-like 2 OS=Homo sapiens OX=9606 GN=TCF7L2 PE=1 SV=2
Q924A0	Transcription factor 7-like 2 OS=Mus musculus OX=10090 GN=Tcf7l2 PE=1 SV=2
P91943	Protein pangolin, isoforms A/H/I/S OS=Drosophila melanogaster OX=7227 GN=pan PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004213 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_032054-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR024940 all species →	Family	Transcription factor TCF/LEF	Interproscan
IPR027397 all species →	Homologous_superfamily	Catenin binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10373 all species →	TRANSCRIPTION FACTOR 7 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016055 all species →	Biological Process	Wnt signaling pathway	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:1990907 all species →	Cellular Component	beta-catenin-TCF complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032054-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032054-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

31.8Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.52	11.31
polyp at pH7 6	18	18	8.72	13.32
coral polyp · control treatment	16	16	10.62	20.36
coral polyp · oil and dispersant treatment	16	16	12.60	28.45
coral polyp · oil treatment	16	16	10.58	31.83
coral polyp · dispersant treatment	16	16	11.80	23.51
Polyp	10	9	4.06	11.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.47
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.09
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.62
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.32
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.14
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.51
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.86
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.17
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.01
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.72
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.29
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.94
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.43
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.47
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.98
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.71
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.95
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.83
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.01
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.87
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.98
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.79
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.02
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.58
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.