Gene detail

Detailed information of OS493_032092-T1 in Lophelia pertusa

Genomic Location: scaffold_233:90779...106069
NR annotation: KAJ7353818.1, Hemicentin-1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_032092-T1

ATGGATGGAATGTATGGGCCTGGAAACCAACCACAACTCCGGCCACAGATGGTGTACCGCTACAACAACTACTTTAACACTTTACCGCACAGTGTGCCTCAAGGATGGAGCAGGCCACAGCAGATGCCTCGGTTTAACTACCGCCCACAGACGACAGGGGAGAGCAAAAATATTTTACCGAAAGTATTAAATATTTCCAAAGAAACAAATGTCAGTACTTTGCATGAGAATGCTACAACAGTTACAAATCTTACAACCGATCATGCCAATGCCACCACTGAAGAGGTCTTGGATGTAGTACGTAGACTTTTTGGCAAAGATAAAGCGCCCATTCTTCACTTCAGCTTCGCTAACATCAATGGTAAAAATGTCCTCGATGAATCGGAGCAAGGGAATGCTGGGATACTTACAGGTCAGGTGACCACGCAGCAGTTTAGTCCCGTATGTGGACTCGGTCTTCATTTTCAAAATGGCGCCTTGACCGTGAATCCAAGCAAACTTAACAGCCTGGTGAAGAAAGAGATGAGCGTGGTCACGTGGGTCAAGATTGAATCTTTAAGTCACGTGAACGTTATCTACGCATGCGTTGGTGGTGGTGTTGTTCAAGTGCTGGAAGTGATAACTATCCAGGGTTCTTCTAATGGGTTTATCCGCTGGCAGTTTAAACTTTATGACAACGCAGGGATCATATTTAATATAGCAACAGAAGCAGTTATTACTCCAGGGATCTGGACCCACATAGCTGCAGCTTACGATGGTGGAAGTGGAAAACTGAAGATATTCGTCAATGGTCGAAAGATCCTGACTACTAGTGACGTCAAGAAAGTGAACCAAATATCATGGGGTCAGCAGATGATGATAGGAAAGTTCCAGAATGCCCCAGGGGCTGACACAGGGATGTACCTTGAAGGGTACTTGGATGAATTTTACCTTTTCAACGCTGTTAGAGATGAGTCGCACGTGAAGAAATTGATGGAAAAATGTGACTTTTCAACAGGAGTATCAGCTTCAGGTGGACTCGCCGTCCACCTCACCTTTGATCAAATCCAAGGGCAGCGCATCGTTGACAATTCAGCGAAAGGCATTCACGGCAACCTTGTGGGACAGTACGCGCAGACTCAGTTCAGTCCTAAATGCCAAAAGGGTCTCCAGCTAGGAGGAGGACTGGGACACATTGAACTGGACGGCAGCAAACTCGATGCAGAGAAGAAAGATGCGATTACAATCTCTTTGTGGGTTCGTGTTGTTAATAACGATCGTGTGAATACAATCTATGGGAGTGCCGGAGCTAAAGGGGTGCATCGTCTTAGTATCAAGTCAACTGGGTCACCAAATGCTGTCGTTGATTGGTCGTACAAGTCACCTGACGGGAAGGTTGTGTTTGAAGTCAGTACCGAGCCTGCGGTACCTGCAGGTATCTGGACTCATATAGCAGCAGTCTACAATGGCGGCCTGGGAAAAATCAAAATATTTGTTGACGGTGTAAAGATTTTAACCACAACTAAAGGTATACAAAAGCAATCCAGTGTAGCTTGGAGTTCTCCGGTGACTATCGGCAAGTTCACCGGAAATAACGCAGAGTTCTTGGAAGGAGCCATTGACGAGTTTTACATATTTACTTCCGCTCTTATGCACGCTGAAGTTCAGTCCTTGATGGAAAAGTGCGAGTTTCCAAGCGATAGCATCTTGTATTTCGTTGACGTCACCACCGGACCGGAATCTAAATCCGGGACACCATCTCGAGTGTTCTTCAAGCTGATTGGTGAAAACGGAGAGCATGGAGAAGTGGAGCTTGGGGAGGAATTTTCAAAAGGAAGTACTAGACCATTCAACGTGTACTCGGCCAACGTTGGTAGACCATTGAAGATCAGTATACGTAAGGACACTAAAGGACTCATCTCCACAGACTGGTTTCTAGAAAAGGTTGTTGTTACTGTTGAAGATCGTACGGATGGACCGTCTTTCATTTTTAACTGTAATTGTTGGATCGGGAAGGACAAAAACGATCTGCAAAAGTATATCCTCCCAGAGAAAAATGTGGATGGTGTTTGGTCGCCTTGGAGTCAGTGGAGCGGCTGTGGTGCGGGCCTTTGTGGAGGAAACAAGAAAGTTCGCACAAGATCATGCACCAACCCTCATCCGTCCGGTGGGGGAAAACCATGCCCTGGGAACACATTTGAAGAAGGAATCTGTCAAATTGATGGTGGTTGGGGTGCCTGGGGAAGCTGGTCACCCTGTAGTAAGACATGTGGTGGTGCTACAGTGACGCGGGAGAGAAAATGTGATAACCCCACCCTGAGAATGGTGGCAAGCCATGTGAACCAAAAGATGCTAAAGAAACTAAGACAGACTGTGATCAACCTTGTGAAATGGTCTGAATGGTCAGACTGGACTCCCTGTGCAAAGTCATGTGGTGGAAGTAAAGTGACACGTACAAGAAGCTGCAGCAATCCTCCTCCTCAGAGGGGTGGGGAAGATTGTCCTGGAGAAGCCACTGATAGTTCTTTTGATTGTGAGACACCTTGCCCAGTTGATGGAAAGTGGGATAAATGGGAAGAATGGACCGTGTGTAGCGCAACCTGTGGGCCTGGTACCAAGGTTAGAACCCGTGAATGCGACAAACCCGCGCCGCAATATGGCGGAGAGTGCCCTGGGAACGGACAAGAAACAGAAGCTTGTGTGATTAGAGCGTGCCCTACAAATGTGATAAACGGAGAGTGGAGCGCTTGGGGTCCCTGGGGTGCTTGCTCGGAGGTAGAGATCTGTAACAGAGGATCACAGGTTCGTACTCGCCTGTGTAACAACCCTGCTCCACAGAACGGCGGAGAGATATGCCCGGGGACTGGATCCGAGAGTCAGGAGTGTCCAAAAACGAACTGCAAAGATACCCCACAAAACGTGGCCGCAACAAAGACTGTGGAACCAGTCTCGTTCATTTCCTTAATGTGTAGTTCAACAAACGCCGAACTGGTCAACGATCCGCCCAACAATGATCTGTTGAAAGCAGTCTTTGCGAATCTTCCCAAACTTGCCCCGAATTTAAAGGGCGGTTACTTTGCCGCCATTGGAAACTCCACAAAATTGAATGAATTATGTTTTGAACCCAAGCAACTGCTGACCATAGCAGAGCTGGCTCAACTCTATCCCAGCTTTCGCTCGGCCAAACCTATGCCATTTTTTGCTGTTCCTGGTGACAAAGAGCACGTGAAAGGAATCAAGGTTAATCTAAGGGAAGATAAAGCCTTATATGGAGTTTCTCCGGGAAGTGAAAGCATCGTGGCGCATGGATTTAATCGAATCGGTAACGCTCTGTTTGCTGTTTATGCCAGCTTATCAGATGCAAACGAGGTGATGGTGGAGGGAACTAGTAGCCAAACAGCATCCTCAGAGGAAATCGAGGCCGCACTTGCCTCACCGGCAGCTCAAAGTGACCATTACATGCCTGAGTATCAAACATTGAAGCGCAGTGAAAGGGACTTAGATGCAAAATCATCTGCCTATGAACTGCATTTTCTGGAAAACCTCTTCAAGGACAGCGAGCATAAGAAGAACACTGCGAAACGAAGCCGCACAATTGAGAACAATTCGCCATCATTTGACGGACATAAAATCCATCGCAGAAACTTATTTACCGATCTAAAATCACATAAACGGGCTCGTTTCTTACGCGCGCGGAAAGCGAAGTCGTACTTTAAGAAACTAACGCACCGAAATATAATATCGCCTTCATATTTCTCTGAACCTATCGACGAAGTCAAGGAAGATACGACGGATGATAAATACGATGATATGAACCCAAATCCGACGTTTTCCTTTCCGCGTCCGCTGAACACTATGGCGCGCCCGCAAGAGCGAGGTTTGACAACGGGAACAAAAAACACGCTCGACCAGAAAGTGCTAGATGTGCTAAAGCGCGTAGGACTGGGTCTAGTAACAATATCTGACCTATCTTTGGGAATCACCGCGACTATGAAAGAAGTGGTTATTCGCGTGAGCGGCAAGGCAGCGCCCAAAGTTATCGGCGGCTGGTTTAATTTGAAATCATACGCAAAGATATCTTCGCTGTAG

Transcript

OS493_032092-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
B3EWZ3	Coadhesin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005496 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR052065 all species →	Family	Complement and asymmetry regulator	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR006558 all species →	Domain	LamG-like jellyroll fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22906 all species →	PROPERDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032092-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_032092-T1 global co-expression network