Gene detail

Detailed information of OS493_032116-T1 in Lophelia pertusa

Genomic Location: scaffold_233:406185...412932
NR annotation: KAJ7353841.1, Protein fam50a [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WV03	Protein FAM50A OS=Mus musculus OX=10090 GN=Fam50a PE=1 SV=1
Q14320	Protein FAM50A OS=Homo sapiens OX=9606 GN=FAM50A PE=1 SV=2
Q4KLV7	Protein FAM50A-B OS=Xenopus laevis OX=8355 GN=fam50a-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005697 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04921 all species →	XAP5	XAP5, circadian clock regulator C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007005 all species →	Family	XAP5 protein	Interproscan
IPR048337 all species →	Domain	FAM50A/XAP5, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12722 all species →	XAP-5 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13119	FAM50, XAP5; protein FAM50	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_032116-T1 global co-expression network