Gene detail

Detailed information of OS493_032171-T1 in Lophelia pertusa

Genomic Location: scaffold_235:136814...145985
NR annotation: KAJ7389317.1, hypothetical protein OS493_032171 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIK9	Coatomer subunit epsilon OS=Gallus gallus OX=9031 GN=COPE PE=2 SV=1
Q28104	Coatomer subunit epsilon OS=Bos taurus OX=9913 GN=COPE PE=1 SV=3
Q60445	Coatomer subunit epsilon OS=Cricetulus griseus OX=10029 GN=COPE PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005637 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04733 all species →	Coatomer_E	Coatomer epsilon subunit	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR006822 all species →	Family	Coatomer, epsilon subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10805 all species →	COATOMER SUBUNIT EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0030126 all species →	Cellular Component	COPI vesicle coat	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17268	COPE; coatomer subunit epsilon	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_032171-T1 global co-expression network