Gene detail

Detailed information of OS493_032309-T1 in Lophelia pertusa

Genomic Location: scaffold_238:194363...204172
NR annotation: KAJ7370419.1, Breast cancer 1, early onset [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_032309-T1

ATGAAAAATACACCTTGTAACCCAAGGGGCTTAAGAAGATCTGTGAAGTCAACGAGTAGTAAAGCACAGGAAAGCAACAACGTTTCTTCTGAAAGAGTAGATCATGATGCTAGTACTTTACAAGAGGAAATTGACAGTCGAGTTTCACAAAAAGAAAATCAAACGATCGTTGGAAATTCTAAAGAGCCGAAACACGACCACGTGGTGGATTGTCCTTCGCATGAAGTAGAAAGTGCTAGTTCCTCACCACATAGTTCTATTAAACGTTATGATATTGCGGATTCGTTTCATTGGTCGGAAACTAGAGACAGGCCCAAAGACATTGAGGATTCCCAAGATGGACCTGTACCTGTTAAATATGATGATAATGAAGATGATCAACGTGTACGAGGAAATGGAGAGAAGGACGACAATGATGAAAAGATTAAAGACGATTTTCCAGATAAATCAGGAGCAAGAAATCTGCACGAAGATGATGATCATGCCTGCATCTCTGTTGGCGATCATAACGGGGATTCCCTAGGCTGTAGTGATGACGAAGGGGATTCCCCCAGCAGTGGCAATCAAGGGAATCCCCCTGAATCTGTAGACGCAGAAAACGAAGAGGAGGAAGTGACGGCATTTTCTCAAGAACTCATTCCTTCTGAAAATGGCGGCGAAGAAGATGATGATGAAATCGCATTATCTTGTAAAGCGCTGGACAGTACTTGTGCATCATCCGCTACATTTCTGTCAGAAACTGCGGCCTCTACTCAGAAAATGGATGTACTTCGCCAGGACGTGGAAGCGATGGAAATAGAGATGCAAGAGCTGAGGGCGTATCTCGCTAAAACTGACGAGAAAAGAGATGAAGCAGAAGACTTGATTGAAGACGACGACATGGAGTATCAAGACGAAGATGAATGCGATGAACCCGACATGTTGCCTTCACTCACTCCACCTCCTCCACTGACACCCAAGAGAATCCCGCCCATGCGACAACTTTCCTCCCCCCTGAAAAACGTTTCACGCTATCTAGATCAGGAGGGGCAGTCTTCAGACGAAGACAGTGATTGTGAAGACATAACAAGGAATAACCGAGAGAAACAGTGCGAGATAAGGAAGAACCCATGTAACGAAAGGAACAAGGTTACAGAGAAGGAGGATGCTAATAAAACGTGTTCAGGGAAGCGCCCTCTTTCTCCAAGTTACGAAGAAGATGGTTTAAGTATCACAACCGCGGCAGAGAACCGCAACGAGGAGACGCCTTCCCCGCCGCGCAGTATTCGCTCAAAACAAAAATCTCAGGAAAAAGACGAAGACGAGTTAATTGTTATCGACGATAGAGACGCGGTTCATTCAAAAACCGGTTCCCTGTTGCTCGTCAAGAGAAGGAAAATGGCCGATGAACTCATCCCCAAGAAATCTCCAGTTGTTAGCTTGCTATTCACAAGAACTGGTAAAGATGCCGCGAGAACCAGGCACTCTCCACAGCCAGTTGGACAGGCTAAAGGTCCGTCACCTACCAAGAAAAGGTCTTCGCCGTTCATCTATTCACGAAAGCGTGGTACAGCGATCTCACCGATCACAGCACAGGATGCTCCACGGCCACGTGACAGGGCGTCACCCGAGAATGTGTCACGCGACAGTGTGTCACGGAACAGTATGTCACGCGATAGTGTGTCATGCAATAGTGTGTCACGTGATAAGATGTCACGCAATCATGTGTCACGTAATAGTCTGCCACGTAATCAATGTCAGTCACCTGATCTGGAGCGTACGAAGCTGAAGGTTGTGACGAATTCAAAAGAGAGAAAAGAAAGCGAACAGAAGATCTGCCCAGGAAGTGCAACAACTAAGCTCTTGTCTTTTGTGGCGACGCGTCTTAACAGGAAACAATTGGCTGAAGCTCGCGCTCTTGCCGAAACGTATGGCGGGAAACTAGCCAGTGAGTTCAATAGCAAGACAAGTCACGTGATTATGGCAACAGATGAGAACATGCAGGTGACACGTCATAGTTATACCATGAAGTACCTATTGGGACTGGCTCTTGGGAAATGGATCGTCAGTCACCAATGGATCGCTGCATGCATTCAAGCTAAATCACTCGTAGCTGAGGTGGATTATGAAGTGAAAGGTGATTCAGGTCTCGGACAGGCGCCCATTCCCCGCTTGGCAAGAACAGCCAGAAATAATAAGGAAGCTCTTTTATTCGAAGACTGTGACGTTCTCTGTTTTGGCGGATTTAGTGCTGCCGTAACTAAAGAACAACTCAGCCAGCTCTTGAAATTTTGTGGCGCACGTGTCTACATCGACGCTGAAAGGTTAAAGAGGAGAGAAAAGGATCGTCGACAAGTTATTGTCATCGATAAAGAAACTCGAAGCAACAGGGATGATTTGAATGCTATCTGCCGTCAGTTGAACACTGTGCCTGTGTCTTTAGAGTGGGTCACGGATAGCATTGCAAATTACAAGGTTCAAGATTTACGAGATTATATCATCGAATTGAAATAA

Transcript

OS493_032309-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q864U1	Breast cancer type 1 susceptibility protein homolog OS=Bos taurus OX=9913 GN=BRCA1 PE=1 SV=1
Q95153	Breast cancer type 1 susceptibility protein homolog OS=Canis lupus familiaris OX=9615 GN=BRCA1 PE=3 SV=1
O54952	Breast cancer type 1 susceptibility protein homolog OS=Rattus norvegicus OX=10116 GN=Brca1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005091 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR031099 all species →	Family	BRCA1-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13763 all species →	BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0031436 all species →	Cellular Component	BRCA1-BARD1 complex	Interproscan
GO:0035066 all species →	Biological Process	obsolete positive regulation of histone acetylation	Interproscan
GO:0035067 all species →	Biological Process	obsolete negative regulation of histone acetylation	Interproscan
GO:0045717 all species →	Biological Process	negative regulation of fatty acid biosynthetic process	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0070531 all species →	Cellular Component	BRCA1-A complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032309-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_032309-T1 global co-expression network