Gene detail

Detailed information of OS493_032456-T1 in Lophelia pertusa

Genomic Location: scaffold_241:527950...529585
NR annotation: KAJ7389296.1, hypothetical protein OS493_032456 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62825	Exocyst complex component 3 OS=Rattus norvegicus OX=10116 GN=Exoc3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06046 all species →	Sec6	Exocyst complex component Sec6	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010326 all species →	Family	Exocyst complex component EXOC3/Sec6	Interproscan

PANTHER

No PANTHER signature was detected for OS493_032456-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032456-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032456-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

63.3Max TPM

22.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.50	37.97
polyp at pH7 6	18	15	22.78	60.67
coral polyp · control treatment	16	16	26.37	43.14
coral polyp · oil and dispersant treatment	16	16	22.03	63.30
coral polyp · oil treatment	16	16	25.61	36.39
coral polyp · dispersant treatment	16	16	19.75	34.31
Polyp	10	9	16.59	39.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.97
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.35
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.93
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.21
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.65
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.62
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.33
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.91
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.71
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.45
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.41
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.63
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.65
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.95
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.43
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.09
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.56
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.29
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.44
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.02
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.85
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.73
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.79
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.01
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.23
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	39.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	36.67
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	25.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.73
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.