Gene detail

Detailed information of OS493_032466-T1 in Lophelia pertusa

Genomic Location: scaffold_242:59609...64492
NR annotation: KAJ7382831.1, hypothetical protein OS493_032466, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16609	Putative apolipoprotein(a)-like protein 2 OS=Homo sapiens OX=9606 GN=LPAL2 PE=5 SV=1
P00747	Plasminogen OS=Homo sapiens OX=9606 GN=PLG PE=1 SV=2
P08519	Apolipoprotein(a) OS=Homo sapiens OX=9606 GN=LPA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000396 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan
PF01392 all species →	Fz	Fz domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF01390 all species →	SEA	SEA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR000001 all species →	Domain	Kringle	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR050759 all species →	Family	Serine proteases and regulators with kringle domains	Interproscan
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24261 all species →	PLASMINOGEN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004175 all species →	Molecular Function	endopeptidase activity	Interproscan
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032466-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032466-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

12.2Max TPM

2.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	1.83	3.96
polyp at pH7 6	18	11	1.50	3.90
coral polyp · control treatment	16	16	2.98	5.08
coral polyp · oil and dispersant treatment	16	15	2.78	9.87
coral polyp · oil treatment	16	16	2.51	5.17
coral polyp · dispersant treatment	16	16	4.91	12.16
Polyp	10	8	0.81	1.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.25
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.78
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.60
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.55
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.21
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.82
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.71
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.67
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.70
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.38
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.33
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.26
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.82
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.