Gene detail

Detailed information of OS493_032492-T1 in Lophelia pertusa

Genomic Location: scaffold_242:378942...386420
NR annotation: KAJ7382854.1, hypothetical protein OS493_032492 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DJB9	Protein argonaute-2 OS=Xenopus tropicalis OX=8364 GN=ago2 PE=2 SV=1
Q8CJG0	Protein argonaute-2 OS=Mus musculus OX=10090 GN=Ago2 PE=1 SV=3
Q9QZ81	Protein argonaute-2 OS=Rattus norvegicus OX=10116 GN=Ago2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000825 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08699 all species →	ArgoL1	Argonaute linker 1 domain	Domain	Interproscan
PF16486 all species →	ArgoN	N-terminal domain of argonaute	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014811 all species →	Domain	Argonaute, linker 1 domain	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR032474 all species →	Domain	Protein argonaute, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0016246 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198 all species →	Molecular Function	miRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032492-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032492-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

15.8Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	4.00	10.96
polyp at pH7 6	18	14	3.76	8.44
coral polyp · control treatment	16	16	6.14	13.26
coral polyp · oil and dispersant treatment	16	15	7.84	14.44
coral polyp · oil treatment	16	16	4.63	8.62
coral polyp · dispersant treatment	16	16	8.15	15.80
Polyp	10	8	1.57	4.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.83
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.44
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.33
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.50
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.75
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.15
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.15
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.09
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.34
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.19
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.21
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.62
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.93
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.62
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.06
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.99
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.38
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.