Gene detail

Detailed information of OS493_032557-T1 in Lophelia pertusa

Genomic Location: scaffold_244:234072...234512
NR annotation: KAJ7370381.1, hypothetical protein OS493_032557 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WYP5	Myo-inositol 2-dehydrogenase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=iolG PE=1 SV=1
O05389	Uncharacterized oxidoreductase YrbE OS=Bacillus subtilis (strain 168) OX=224308 GN=yrbE PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002264 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02894 all species →	GFO_IDH_MocA_C	Oxidoreductase family, C-terminal alpha/beta domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004104 all species →	Domain	Gfo/Idh/MocA-like oxidoreductase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42840 all species →	NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006740 all species →	Biological Process	NADPH regeneration	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032557-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032557-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

22.3Max TPM

6.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.36	17.12
polyp at pH7 6	18	18	8.81	22.31
coral polyp · control treatment	16	16	6.90	11.71
coral polyp · oil and dispersant treatment	16	15	5.01	10.00
coral polyp · oil treatment	16	16	6.80	19.48
coral polyp · dispersant treatment	16	16	2.75	5.12
Polyp	10	9	7.23	21.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.12
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.04
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.86
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.72
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.97
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.01
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.39
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.27
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.35
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.48
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.48
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.91
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.18
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.67
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.53
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.86
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.