Gene detail

Detailed information of OS493_032579-T1 in Lophelia pertusa

Genomic Location: scaffold_244:543353...544603
NR annotation: KAJ7370402.1, hypothetical protein OS493_032579 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17172 all species →	GST_N_4	Glutathione S-transferase N-terminal domain	Domain	Interproscan
PF17171 all species →	GST_C_6	Glutathione S-transferase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040079 all species →	Family	Glutathione transferase family	Interproscan
IPR012336 all species →	Domain	Thioredoxin-like fold	Interproscan
IPR033468 all species →	Domain	Metaxin, glutathione S-transferase domain	Interproscan
IPR036282 all species →	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR050931 all species →	Family	Mitochondrial Protein Transport Metaxin	Interproscan
IPR026928 all species →	Family	FAX/IsoI-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12289 all species →	METAXIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032579-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032579-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

2,392.4Max TPM

753.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	482.03	655.17
polyp at pH7 6	18	18	510.51	701.03
coral polyp · control treatment	16	16	713.16	1,030.11
coral polyp · oil and dispersant treatment	16	16	980.36	1,563.25
coral polyp · oil treatment	16	16	723.02	1,213.89
coral polyp · dispersant treatment	16	16	1,493.69	2,392.39
Polyp	10	10	249.58	441.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	655.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	637.14
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	621.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	614.41
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	613.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	607.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	590.35
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	582.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	483.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	480.31
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	480.19
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	480.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	382.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	364.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	292.02
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	290.64
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	253.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	247.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	701.03
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	698.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	694.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	677.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	586.43
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	573.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	552.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	525.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	519.36
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	518.30
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	512.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	497.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	487.47
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	454.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	446.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	435.47
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	157.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	151.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,030.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,008.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	952.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	949.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	930.93
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	851.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	809.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	785.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	731.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	670.74
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	667.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	620.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	520.38
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	425.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	261.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	194.33
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,563.25
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,403.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,311.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,292.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,224.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,088.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,075.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	991.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	969.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	902.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	856.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	799.53
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	719.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	679.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	564.02
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	243.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,213.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,175.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,119.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,082.95
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	888.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	848.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	823.83
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	763.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	762.19
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	623.33
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	574.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	503.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	435.09
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	423.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	224.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	104.91
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,392.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,273.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,031.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,899.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,786.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,730.60
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,729.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,601.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,596.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,571.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,449.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,365.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,303.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	899.80
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	187.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	441.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	366.93
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	307.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	255.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	255.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	240.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	212.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	173.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	124.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	118.92

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.