Gene detail

Detailed information of OS493_032585-T1 in Lophelia pertusa

Genomic Location: scaffold_244:566100...568887
NR annotation: KAJ7370405.1, Transmembrane anterior posterior transformation protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NXT6	Transmembrane anterior posterior transformation protein 1 homolog OS=Homo sapiens OX=9606 GN=TAPT1 PE=1 SV=1
Q4VBD2	Transmembrane anterior posterior transformation protein 1 OS=Mus musculus OX=10090 GN=Tapt1 PE=1 SV=2
Q5ZLG8	Transmembrane anterior posterior transformation protein 1 homolog OS=Gallus gallus OX=9031 GN=TAPT1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005137 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_032585-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR008010 all species →	Family	Tapt1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13317 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0045724 all species →	Biological Process	positive regulation of cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032585-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032585-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

47.3Max TPM

11.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.60	30.13
polyp at pH7 6	18	18	15.87	30.96
coral polyp · control treatment	16	16	7.99	14.10
coral polyp · oil and dispersant treatment	16	16	6.31	11.81
coral polyp · oil treatment	16	16	8.84	15.18
coral polyp · dispersant treatment	16	16	5.64	14.49
Polyp	10	10	18.66	47.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.24
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.99
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.39
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.87
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.76
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.68
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.24
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.59
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.92
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.49
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.55
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.87
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.81
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.53
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.30
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.96
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.55
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.04
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.16
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.21
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	47.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	26.46
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.07
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.83
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	16.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.16
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.70

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.